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GSL Shell : Library and Lua shell interface binding to the GNU Scientific Library (GSL), including matrices, vectors, and various math routines
Redis fork : Redis is an in-memory database that persists on disk. The data model is key-value, but many different kind of values are supported: Strings, Lists, Sets, Sorted Sets, Hashes. Redis embeds Lua; this fork switches from PUC-Lua to LuaJIT.
Tarantool : Tarantool is a replicated, persistent in-memory database and a LuaJIT application server.
Csound : Csound is a user-programmable, open source, cross-platform software sound synthesis system and music composition system. Csound is its own language, but embeds LuaJIT to provide a more advanced programming paradigm, primarily for algorithmic composition, but also for sound synthesis.
Snabb Switch : Snabb Switch is an open source virtualized Ethernet switch for software-defined cloud networks. Snabb Switch is a program that runs on the Hypervisor host and transfers Ethernet packets between virtual and physical machines.
BCZ.com uses luajit for it's chat application development and search interfacing.
YEng is an open source game engine
Goluwa An experimental game engine written in luajit
KOReader is an open ebook reader program for Kindle, Kobo and Android devices which supports PDF, DJVU, EPUB, FB2, HTML, CHM and other file formats. It has several features such as embedded document reflow backed by libk2pdfopt, file sync and integration with Calibre for book collection management. The application itself is implemented in Lua and runs on LuaJIT, but integrates several C and C++ libraries, most of them already ported to FFI.